Build ChEMBL for SEA
Jump to navigation
Jump to search
Here is the tutorial for building a ChEMBL for SEA based on Matt O'Meara
Setting up Postgres
Login (ask Chinzo or Ben for creating credential to login to phi server)
psql -h phi.cluster.ucsf.bkslab.org -U momeara -d momeara -p 5432 yum install postgresql95-devel
Setting up R BioChemPantry
Matt's R package that uses for process Postgres from R that has scripts for loading ChEMBL [Link to git hub https://github.com/momeara/BioChemPantry]
- Download BioChemPantry
R install.packages("devtools") devtools::install_github("momeara/BioChemPantry")
- Set up library building script
cd <dir>/BioChemPantry/vignette/sets cp chembl23 chembl25 cd chembl25/scripts replace string contains "chembl23" with "chembl25" in script 0-8
Download Zr
devtools::install_github("momeara/Zr")