Build ChEMBL for SEA

Here is the tutorial for building a ChEMBL for SEA based on Matt O'Meara

Setting up Postgres

Login (ask Chinzo or Ben for creating credential to login to phi server)

 psql -h phi.cluster.ucsf.bkslab.org -U momeara -d momeara -p 5432
 yum install postgresql95-devel

Setting up R BioChemPantry

Matt's R package that uses for process Postgres from R that has scripts for loading ChEMBL [Link to git hub https://github.com/momeara/BioChemPantry]

• Download BioChemPantry

R
install.packages("devtools")
devtools::install_github("momeara/BioChemPantry")

• Set up library building script

cd <dir>/BioChemPantry/vignette/sets
cp chembl23 chembl25
cd chembl25/scripts
replace string contains "chembl23" with "chembl25" in script 0-8

Download Zr

devtools::install_github("momeara/Zr")