Jji jeremy: Difference between revisions
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../../etc/sea-prepare.csh chem2.smi bogus1 | ../../etc/sea-prepare.csh chem2.smi bogus1 | ||
../../etc/split_db.py chem2.ecfp4.set.gz chem2 | ../../etc/split_db.py chem2.ecfp4.set.gz chem2 | ||
= chembl19 update in zinc15 = | |||
zinc15=# grant all privileges on table gene2 to test; | |||
GRANT | |||
zinc15=# grant all privileges on table annotation2 to test; | |||
GRANT | |||
zinc15=# grant all privileges on table note2 to test; |
Revision as of 17:13, 26 November 2014
bunch of things going on
a. clustering at 0.2 on gimel
b. loadanno.pl into zinc15
c. sprot/uniprot download fresh
d.
1. mas7.csh - export smiles per sial etc
2. cm2.csh - cluster
3.
sea building
(before this, we ran our extraction scripts out of chembl)
../../etc/sea-prepare.csh chem2.smi bogus1 ../../etc/split_db.py chem2.ecfp4.set.gz chem2
chembl19 update in zinc15
zinc15=# grant all privileges on table gene2 to test; GRANT zinc15=# grant all privileges on table annotation2 to test; GRANT zinc15=# grant all privileges on table note2 to test;