DOCK 3.7: Difference between revisions
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The main DOCK3.7 paper, please read & cite: | The main DOCK3.7 paper, please read & cite: | ||
[http://www.plosone.org/article/info:doi/10.1371/journal.pone.0075992 | [http://www.plosone.org/article/info:doi/10.1371/journal.pone.0075992 | | ||
Coleman, Carchia, Sterling, Irwin & Shoichet, PLOS ONE 2013.] | Coleman, Carchia, Sterling, Irwin & Shoichet, PLOS ONE 2013.] | ||
Revision as of 21:18, 13 February 2014
This is the documentation wiki for UCSF DOCK 3.7, which is available at:
http://dock.compbio.ucsf.edu/DOCK3.7/
The main DOCK3.7 paper, please read & cite: [http://www.plosone.org/article/info:doi/10.1371/journal.pone.0075992 | Coleman, Carchia, Sterling, Irwin & Shoichet, PLOS ONE 2013.]
INDOCK
mol2db2 and mol2db2 format
Ligand Preparation
Protein Target Preparation (Adding Static Waters to the Protein Structure) (Flexible Docking)
ZINC Subset DB2 file locations
Running DOCK
Analyzing DOCK Results
Auto-DUD-E Test Set (external site)
http://i.creativecommons.org/l/by-sa/3.0/88x31.png
This work is licensed under the Creative Commons Attribution-ShareAlike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/3.0/ This page is adapted from "DOCK3.7 Documentation" by Ryan G. Coleman. Based on a work at https://sites.google.com/site/dock37wiki/.
OLD
DOCK 3.7 is the latest version of the DOCK 3 series of docking programs used and developed by the Shoichet Laboratory.