What Can Dock Do

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We and others have used DOCK for the following applications:

  • predict binding modes of small molecule-protein complexes
  • search databases of ligands for compounds that inhibit enzyme activity
  • search databases of ligands for compounds that bind a particular protein
  • search databases of ligands for compounds that bind nucleic acid targets
  • examine possible binding orientations of protein-protein and protein-DNA complexes
  • help guide synthetic efforts by examining small molecules that are computationally derivatized
  • many more...


Back to DOCK 6.