Get msms
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see the following website for information:
Installing MSMS
wget http://mgltools.scripps.edu/downloads/tars/releases/MSMSRELEASE/REL2.6.1/msms_i86_64Linux2_2.6.1.tar.gz tar -xzvf msms_i86_64Linux2_2.6.1.tar.gz ln -s /nfs/home/tbalius/zzz.programs/msms/msms.x86_64Linux2.2.6.1.staticgcc /nfs/home/tbalius/zzz.programs/msms/msms ln -s `which awk` nawk